I thought they had different fuel curves. The AT's actually have a switch on the center console to change the fuel map (or am I mistaken).
Is the auto tranny controlled by the ecu? If it is then the ecu's would be different, unless the ecu can determine the tranny type and change how it works. I don't know if this is true or not so if I'm wrong, someone please correct me.
--Edit--
Did a little research and found the switch to change shifting points. Also the auto ecu is set for smaller injectors as the manual is set up for larger injectors.
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